| Date | Players | Pos | Injury | Status | Comment |
|---|---|---|---|---|---|
| 10/03/09 | Jorge De La Rosa | SP | Tightness in right groin | Day-to-day | Expected return 04/05/10 |
| 09/08/09 | Chris Nelson | Torn ligament, right wrist | On 60-day DL | Expected return 04/05/10 | |
| 09/01/09 | Greg Smith | SP | Back strain | On 60-day DL | Expected return 03/30/10 |
| 09/01/09 | Greg Reynolds | SP | Right shoulder soreness | On 60-day DL | Expected return 04/05/10 |
| 07/21/09 | Manuel Corpas | RP | Right elbow surgery | Off 60-day DL | Expected return 04/05/10 |
| 07/11/09 | Alan Embree | RP | Fractured right tibia - out for season | Off 60-day DL | Expected return 04/05/10 |
| 03/27/09 | Jeff Francis | SP | Left shoulder surgery - out for season | On 60-day DL | Expected return 03/30/10 |
| 03/27/09 | Taylor Buchholz | RP | Right elbow surgery - out for season | Off 60-day DL | Expected return 04/05/10 |
| 02/19/09 | Jeff Francis | SP | Recurring left shoulder soreness | Day-to-day | Expected return 03/30/10 |
| Date | Players | Pos | Transaction |
|---|---|---|---|
| 11/20 | Paul Phillips | C | Signed to a Minor League Contract |
| 11/14 | Rafael Betancourt | P | Declared Free Agency |
| 11/13 | Juan Rincon | P | Declared Free Agency |
| 11/13 | Greg Smith | P | Removed From 60-Day DL |
| 11/13 | Greg Reynolds | P | Removed From 60-Day DL |
| 11/13 | Chris Nelson | SS | Removed From 60-Day DL |
| 11/13 | Jeff Francis | P | Removed From 60-Day DL |
| 11/09 | Paul Phillips | C | Refused Minor League Assignment - Free Agent |
| 11/09 | Joe Beimel | P | Declared Free Agency |
| 11/09 | Jose Contreras | P | Declared Free Agency |
| 11/09 | Josh Fogg | P | Declared Free Agency |
| 11/09 | Matt Herges | P | Declared Free Agency |
| 11/09 | Paul Phillips | C | Outrighted to Minors |
| 11/06 | Yorvit Torrealba | C | Declared Free Agency |
| 11/06 | Alan Embree | P | Declared Free Agency |
| 11/06 | Manuel Corpas | P | Removed From 60-Day DL |
| 11/06 | Alan Embree | P | Removed From 60-Day DL |
| 11/06 | Taylor Buchholz | P | Removed From 60-Day DL |
| 11/05 | Jason Giambi | 1B | Declared Free Agency |
| 11/05 | Jason Marquis | P | Declared Free Agency |
| 11/05 | Matt Belisle | P | Signed |
| 11/05 | Randy Flores | P | Signed |